6RAR Dna Binding Protein date Apr 07, 2019
title Pmar-Lig_pres3-Mn
authors H.K.S.Leiros, A.Williamson
compound source
Molecule: Dna (5'- D(Tptpcpcpgpapcpapgptpgpgpgpgptpcpgpcpap 3');
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dnarna (5'-D(Aptptpgpcpgpapc)-R(P(Omc)) 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcpapcptpaptpcpgpgpapa)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Atp-Dependent Dna Ligase
Chain: I
Engineered: Yes

Organism_scientific: Prochlorococcus Marinus Str. Mit 9302
Organism_taxid: 74545
Gene: Eu96_0746
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.233 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.304 103.315 68.543 90.00 90.79 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand AMP, MN, OMC, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (6rar.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 6RAR
  • CSU: Contacts of Structural Units for 6RAR
  • Structure Factors (1536 Kb)
  • Retrieve 6RAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RAR from S2C, [Save to disk]
  • View 6RAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RAR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6rar from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rar_C] [6rar_I] [6rar_D] [6rar_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RAR
  • Community annotation for 6RAR at PDBWiki (http://pdbwiki.org)

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