6RBF Antimicrobial Protein date Apr 10, 2019
title Mucin 2 D3 Domain
authors G.Javitt, D.Fass
compound source
Molecule: Mucin-2
Chain: A, B, C, D
Synonym: Muc-2,Intestinal Mucin-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Muc2, Smuc
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.217 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.461 156.925 93.584 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CA, GOL, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (414 Kb) [Save to disk]
  • Biological Unit Coordinates (6rbf.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (6rbf.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (6rbf.pdb3.gz) 100 Kb
  • Biological Unit Coordinates (6rbf.pdb4.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 6RBF
  • CSU: Contacts of Structural Units for 6RBF
  • Structure Factors (1440 Kb)
  • Retrieve 6RBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RBF from S2C, [Save to disk]
    • View 6RBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RBF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rbf_D] [6rbf_A] [6rbf_C] [6rbf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RBF
  • Community annotation for 6RBF at PDBWiki (http://pdbwiki.org)

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