6RDG Proton Transport date Apr 12, 2019
title Cryoem Structure Of Polytomella F-Atp Synthase, Primary Rota 3, Focussed Refinement Of F1 Head And Rotor
authors B.J.Murphy, N.Klusch, O.Yildiz, W.Kuhlbrandt
compound source
Molecule: Mitochondrial Atp Synthase Subunit C
Chain: A, B, C, D, E, F, G, H, I, J
 Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Mitochondrial Atp Synthase Subunit Oscp
Chain: P
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Epsilon: Polytomella F-Atp Synthase Epsilon Subun
Chain: Q
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Mitochondrial Atp Synthase Subunit Delta
Chain: R
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Atp Synthase Gamma Chain, Mitochondrial
Chain: S
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Atp Synthase Subunit Alpha
Chain: T, U, V
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Atp Synthase Subunit Beta
Chain: X, Y, Z
Ec: 7.1.2.2
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.90 Å
ligand ADP, ATP, MG enzyme E.C.7.1.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, J, B, H, D, I, G


P


Q


R


S


T, V, U


Y, Z, X


Primary referenceRotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling., Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuhlbrandt W, Science. 2019 Jun 21;364(6446). pii: 364/6446/eaaw9128. doi:, 10.1126/science.aaw9128. Epub 2019 Jun 20. PMID:31221832
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (625 Kb) [Save to disk]
  • Biological Unit Coordinates (6rdg.pdb1.gz) 605 Kb
  • LPC: Ligand-Protein Contacts for 6RDG
  • CSU: Contacts of Structural Units for 6RDG
  • Retrieve 6RDG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RDG from S2C, [Save to disk]
    • View 6RDG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RDG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rdg_Y] [6rdg_U] [6rdg_C] [6rdg_S] [6rdg_X] [6rdg_Q] [6rdg_E] [6rdg_D] [6rdg_Z] [6rdg_T] [6rdg_R] [6rdg_H] [6rdg_F] [6rdg_G] [6rdg_J] [6rdg_B] [6rdg_V] [6rdg_A] [6rdg_I] [6rdg_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RDG
  • Community annotation for 6RDG at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science