6REY Hydrolase date Apr 12, 2019
title Human 20s-Pa200 Proteasome Complex
authors A.Toste Rego, P.C.A.Da Fonseca
compound source
Molecule: Proteasome Subunit Alpha Type-6
Chain: A, O
Synonym: 27 Kda Prosomal Protein,P27k,Macropain Iota Chain, Multicatalytic Endopeptidase Complex Iota Chain,Proteasome Chain;
Ec: 3.4.25.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psma6, Pros27
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Alpha Type-2
Chain: B, P
Synonym: Macropain Subunit C3,Multicatalytic Endopeptidase Subunit C3,Proteasome Component C3;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psma2, Hc3, Psc3
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Alpha Type-4
Chain: C, Q
Synonym: Macropain Subunit C9,Multicatalytic Endopeptidase Subunit C9,Proteasome Component C9,Proteasome Subunit L;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psma4, Hc9, Psc9
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Alpha Type-7
Chain: D, R
Synonym: Proteasome Subunit Rc6-1,Proteasome Subunit Xapc7
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psma7, Hspc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Alpha Type-5
Chain: E, S
Synonym: Macropain Zeta Chain,Multicatalytic Endopeptidase Zeta Chain,Proteasome Zeta Chain;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psma5
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Alpha Type-1
Chain: F, T
Synonym: 30 Kda Prosomal Protein,Pros-30,Macropain Subunit Multicatalytic Endopeptidase Complex Subunit C2,Proteasome C2,Proteasome Nu Chain;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psma1, Hc2, Nu, Pros30, Psc2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Alpha Type-3
Chain: G, U
Synonym: Macropain Subunit C8,Multicatalytic Endopeptidase Subunit C8,Proteasome Component C8;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psma3, Hc8, Psc8
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Beta Type-6
Chain: H, V
Synonym: Macropain Delta Chain,Multicatalytic Endopeptidase Delta Chain,Proteasome Delta Chain,Proteasome Subunit Y;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmb6, Lmpy, Y
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Beta Type-7
Chain: I, W
Synonym: Macropain Chain Z,Multicatalytic Endopeptidase Com Z,Proteasome Subunit Z;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmb7, Z
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Beta Type-3
Chain: J, X
Synonym: Proteasome Chain 13,Proteasome Component C10-II,Pr Theta Chain;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmb3
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Beta Type-2
Chain: K, Y
Synonym: Macropain Subunit C7-I,Multicatalytic Endopeptidas Subunit C7-I,Proteasome Component C7-I;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmb2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Beta Type-5
Chain: L, Z
Synonym: Macropain Epsilon Chain,Multicatalytic Endopeptida Epsilon Chain,Proteasome Chain 6,Proteasome Epsilon Chain,P Subunit Mb1,Proteasome Subunit X;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmb5, Lmpx, Mb1, X
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Beta Type-1
Chain: M, a
Synonym: Macropain Subunit C5,Multicatalytic Endopeptidase Subunit C5,Proteasome Component C5,Proteasome Gamma Chain;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmb1, Psc5
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Subunit Beta Type-4
Chain: N, b
Synonym: 26 Kda Prosomal Protein,Pros-26,Macropain Beta Cha Multicatalytic Endopeptidase Complex Beta Chain,Proteasome Chain,Proteasome Chain 3,Hsn3;
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmb4, Pros26
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Proteasome Activator Complex Subunit 4
Chain: c, d
Synonym: Proteasome Activator Pa200
Engineered: Yes
Other_details: I6p And K0w Molecules Bound To Pa200
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psme4, Kiaa0077
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand IHP, K0W enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, O
  • positive regulation of NF-ka...

    • D, R


    F, T


    G, U


    J, X


    K, Y


    N, b


    P, B


    Q, C


    S, E


    V, W, H, I


    Z, L


    a, M


    d, c
  • peptidase activator activity...


    • Primary referenceCharacterization of Fully Recombinant Human 20S and 20S-PA200 Proteasome Complexes., Toste Rego A, da Fonseca PCA, Mol Cell. 2019 Oct 3;76(1):138-147.e5. doi: 10.1016/j.molcel.2019.07.014. Epub, 2019 Aug 28. PMID:31473102
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1296 Kb) [Save to disk]
  • Biological Unit Coordinates (6rey.pdb1.gz) 1258 Kb
  • LPC: Ligand-Protein Contacts for 6REY
  • CSU: Contacts of Structural Units for 6REY
  • Retrieve 6REY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6REY from S2C, [Save to disk]
    • View 6REY in 3D
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    • Visual 3D analysis of 6REY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rey_Z] [6rey_D] [6rey_M] [6rey_B] [6rey_K] [6rey_T] [6rey_W] [6rey_X] [6rey_b] [6rey_P] [6rey_V] [6rey_O] [6rey_E] [6rey_A] [6rey_c] [6rey_S] [6rey_N] [6rey_a] [6rey_H] [6rey_G] [6rey_C] [6rey_U] [6rey_F] [6rey_I] [6rey_d] [6rey_J] [6rey_Y] [6rey_R] [6rey_L] [6rey_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6REY
  • Community annotation for 6REY at PDBWiki (http://pdbwiki.org)

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