6RJL Peptide Binding Protein date Apr 27, 2019
title Fragment Az-018 Binding At The Tazps8914-3-3 Sigma Interfac
authors S.Genet, M.Wolter, X.Guillory, B.Somsen, S.Leysen, J.Patel, P.Cast C.Ottmann
compound source
Molecule: 14-3-3 Protein Sigma
Chain: A
Synonym: Epithelial Cell Marker Protein 1,Stratifin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sfn, Hme1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tazps89
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.172 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.200 112.390 62.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.28 Å
ligand K5Z, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein kinase C inhibitor a...
  • positive regulation of prote...

  • Primary referenceFragment-based Differential Targeting of PPI Stabilizer Interfaces., Guillory X, Wolter M, Leysen S, Neves JF, Kuusk A, Genet S, Somsen B, Morrow J, Rivers E, van Beek L, Patel J, Goodnow R, Schoenherr H, Fuller N, Cao Q, Doveston RG, Brunsveld L, Arkin MR, Castaldi MP, Boyd H, Landrieu I, Chen H, Ottmann C, J Med Chem. 2020 Jun 5. doi: 10.1021/acs.jmedchem.9b01942. PMID:32501690
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (6rjl.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 6RJL
  • CSU: Contacts of Structural Units for 6RJL
  • Structure Factors (2021 Kb)
  • Retrieve 6RJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RJL from S2C, [Save to disk]
  • View 6RJL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RJL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rjl_P] [6rjl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RJL
  • Community annotation for 6RJL at PDBWiki (http://pdbwiki.org)

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