6RP0 Hydrolase date May 13, 2019
title The Crystal Structure Of A Complex Between The Llfpg Protein Dna And An Inhibitor
authors F.Coste, S.Goffinont, B.Castaing
compound source
Molecule: Formamidopyrimidine-Dna Glycosylase
Chain: A
Engineered: Yes
Organism_scientific: Lactococcus Lactis Subsp. Cremoris
Organism_taxid: 1359
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cptpcptptptp(3dr)Ptptptpcpt 3');
Chain: B, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpcpgpapgpapapapcpapapapgp
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.164 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.180 92.180 139.726 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand 3DR, 5JL, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (6rp0.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 6RP0
  • CSU: Contacts of Structural Units for 6RP0
  • Structure Factors (1188 Kb)
  • Retrieve 6RP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RP0 from S2C, [Save to disk]
  • View 6RP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RP0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6rp0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rp0_A] [6rp0_B] [6rp0_F] [6rp0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RP0
  • Community annotation for 6RP0 at PDBWiki (http://pdbwiki.org)

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