6RQT Transcription date May 16, 2019
title Rna Polymerase I-Twh-Rrn3-Dna
authors C.W.Mueller, Y.Sadian, L.Tafur
compound source
Molecule: Template Strand
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Nontemplate Strand
Chain: U
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna-Directed Rna Polymerase I Subunit Rpa190
Chain: A
Synonym: Dna-Directed Rna Polymerase I 190 Kda Polypeptide, Directed Rna Polymerase I Largest Subunit;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpa190, Rpa1, Rrn1, Yor341w, O6276
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerase I Subunit Rpa135
Chain: B
Synonym: Dna-Directed Rna Polymerase I 135 Kda Polypeptide, Directed Rna Polymerase I Polypeptide 2,Rna Polymerase I Su
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpa135, Rpa2, Rrn2, Srp3, Ypr010c, Yp9531.03c
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp
Chain: C
Synonym: Rna Polymerases I And III Subunit Ac1,C37,Dna-Dire Polymerases I And III 40 Kda Polypeptide,C40;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpc40, Rpa5, Rpc5, Ypr110c, P8283.18
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerase I Subunit Rpa14
Chain: D
Synonym: A14,Dna-Directed Rna Polymerase I 14 Kda Polypepti
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpa14, Ydr156w, Yd8358.11
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: E
Synonym: Rna Polymerases I,II,And III Subunit Abc1,Abc27,Dn Rna Polymerases I,And III 27 Kda Polypeptide;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpb5, Rpa7, Rpc9, Ybr154c, Ybr1204
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: F
Synonym: Rna Polymerases I,II,And III Subunit Abc2,Abc23,Dn Rna Polymerases I,And III 23 Kda Polypeptide;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpo26, Rpb6, Ypr187w, P9677.8
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerase I Subunit Rpa43
Chain: G
Synonym: A43,Dna-Directed Dna-Dependent Rna Polymerase 36 K Polypeptide;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpa43, Rrn12, Yor340c, O6271
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: H
Synonym: Rna Polymerases I,II,And III Subunit Abc3,Abc14.4, Dna-Directed Rna Polymerases I,And III 14.5 Kda Polypeptide
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpb8, Yor224c, Yor50-14
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerase I Subunit Rpa12
Chain: I
Synonym: A12,A12.2,Dna-Directed Rna Polymerase I 13.7 Kda Polypeptide;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpa12, Rrn4, Yjr063w, J1747
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: J
Synonym: Rna Polymerases I,II,And III Subunit Abc5,Abc10-Be Dna-Directed Rna Polymerases I,And III 8.3 Kda Polypeptide;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpb10, Yor210w
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp
Chain: K
Synonym: Rna Polymerases I And III Subunit Ac2,Ac19,Dna-Dir Polymerases I And III 16 Kda Polypeptide,Rpa19;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpc19, Ynl113w, N1937
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: L
Synonym: Rna Polymerases I,II,And III Subunit Abc4,Abc10-Al
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpc10, Rpb12, Yhr143w-A, Yhr143bw
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerase I Subunit Rpa49
Chain: M
Synonym: A49,Dna-Directed Rna Polymerase I 49 Kda Polypepti
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpa49, Rrn13, Ynl248c, N0880
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna-Directed Rna Polymerase I Subunit Rpa34
Chain: N
Synonym: A34,Dna-Directed Dna-Dependent Rna Polymerase 34.5 Polypeptide,A34.5;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rpa34, Yjl148w, J0637
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn3;
Chain: O
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rrn3, Ykl125w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E
  • RNA-directed 5'-3' RNA polym...


  • F
  • RNA-directed 5'-3' RNA polym...


  • G


    H
  • RNA-directed 5'-3' RNA polym...


  • I


    J
  • RNA-directed 5'-3' RNA polym...

  • DNA-directed RNA polymerase ...
  • K


    L
  • RNA-directed 5'-3' RNA polym...


  • M


    N


    O


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (734 Kb) [Save to disk]
  • Biological Unit Coordinates (6rqt.pdb1.gz) 723 Kb
  • LPC: Ligand-Protein Contacts for 6RQT
  • CSU: Contacts of Structural Units for 6RQT
  • Retrieve 6RQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RQT from S2C, [Save to disk]
  • View 6RQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RQT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6rqt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rqt_U] [6rqt_A] [6rqt_N] [6rqt_G] [6rqt_J] [6rqt_I] [6rqt_D] [6rqt_C] [6rqt_E] [6rqt_B] [6rqt_T] [6rqt_H] [6rqt_M] [6rqt_O] [6rqt_L] [6rqt_F] [6rqt_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RQT
  • Community annotation for 6RQT at PDBWiki (http://pdbwiki.org)

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