6RT8 Hydrolase date May 22, 2019
title Structure Of Catharanthine Synthase - An Alpha-Beta Hydrolas Catharanthus Roseus With A Cleaviminium Intermediate Bound
authors L.Caputi, J.Franke, K.Bussey, S.C.Farrow, I.J.Curcino Vieira, C.E.M.Stevenson, D.M.Lawson, S.E.O'Connor
compound source
Molecule: Catharanthine Synthase
Chain: A, B, C, D, E, F, G, H
Synonym: Hydrolase 1,Crhl1
Ec: 4.-.-.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Catharanthus Roseus
Organism_common: Madagascar Periwinkle
Organism_taxid: 4058
Gene: Cs, Hl1, Caros025416
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Solubl21
Expression_system_plasmid: Popinf
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.540 121.030 157.980 90.00 99.02 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand KJE, P6G enzyme Lyase E.C.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (831 Kb) [Save to disk]
  • Biological Unit Coordinates (6rt8.pdb1.gz) 210 Kb
  • Biological Unit Coordinates (6rt8.pdb2.gz) 212 Kb
  • Biological Unit Coordinates (6rt8.pdb3.gz) 207 Kb
  • Biological Unit Coordinates (6rt8.pdb4.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 6RT8
  • CSU: Contacts of Structural Units for 6RT8
  • Structure Factors (6629 Kb)
  • Retrieve 6RT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RT8 from S2C, [Save to disk]
    • View 6RT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RT8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rt8_C] [6rt8_F] [6rt8_B] [6rt8_E] [6rt8_D] [6rt8_A] [6rt8_G] [6rt8_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RT8
  • Community annotation for 6RT8 at PDBWiki (http://pdbwiki.org)

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