6RTA Hydrolase date May 22, 2019
title Tetragonal Lysozyme Grown With 300gl Ficoll
authors P.J.B.Pereira, C.Ferreira, P.M.Martins
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C,Allergen Gal D Iv
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.164 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.662 78.662 37.105 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProtein crystals as a key for deciphering macromolecular crowding effects on biological reactions., Ferreira C, Pinto MF, Macedo-Ribeiro S, Pereira PJB, Rocha FA, Martins PM, Phys Chem Chem Phys. 2020 Jul 8. doi: 10.1039/d0cp02469d. PMID:32638771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (6rta.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 6RTA
  • CSU: Contacts of Structural Units for 6RTA
  • Structure Factors (472 Kb)
  • Retrieve 6RTA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RTA from S2C, [Save to disk]
    • View 6RTA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RTA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rta_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RTA
  • Community annotation for 6RTA at PDBWiki (http://pdbwiki.org)

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