6RUO	Transcription	date	May 28, 2019
title	Rna Polymerase I Open Complex Conformation 1
authors	C.W.Mueller, Y.Sadian, L.Tafur
compound		source
Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn7; Chain: Q Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Atcc 204508 S288c Gene: Rrn7, Yjl025w, J1273 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna-Directed Rna Polymerase I Subunit Rpa49 Chain: M Synonym: A49,Dna-Directed Rna Polymerase I 49 Kda Polypepti Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpa49, Rrn13, Ynl248c, N0880 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerase I Subunit Rpa190 Chain: A Synonym: Dna-Directed Rna Polymerase I 190 Kda Polypeptide, Directed Rna Polymerase I Largest Subunit; Ec: 2.7.7.6 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpa190, Rpa1, Rrn1, Yor341w, O6276 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerase I Subunit Rpa135 Chain: B Synonym: Dna-Directed Rna Polymerase I 135 Kda Polypeptide, Directed Rna Polymerase I Polypeptide 2,Rna Polymerase I Su Ec: 2.7.7.6 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpa135, Rpa2, Rrn2, Srp3, Ypr010c, Yp9531.03c Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp Chain: C Synonym: Rna Polymerases I And III Subunit Ac1,C37,Dna-Dire Polymerases I And III 40 Kda Polypeptide,C40; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpc40, Rpa5, Rpc5, Ypr110c, P8283.18 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerase I Subunit Rpa14 Chain: D Synonym: A14,Dna-Directed Rna Polymerase I 14 Kda Polypepti Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpa14, Ydr156w, Yd8358.11 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: E Synonym: Rna Polymerases I,II,And III Subunit Abc1,Abc27,Dn Rna Polymerases I,And III 27 Kda Polypeptide; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Atcc 204508 S288c Gene: Rpb5, Rpa7, Rpc9, Ybr154c, Ybr1204 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: F Synonym: Rna Polymerases I,II,And III Subunit Abc2,Abc23,Dn Rna Polymerases I,And III 23 Kda Polypeptide; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Atcc 204508 S288c Gene: Rpo26, Rpb6, Ypr187w, P9677.8 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerase I Subunit Rpa43 Chain: G Synonym: A43,Dna-Directed Dna-Dependent Rna Polymerase 36 K Polypeptide; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpa43, Rrn12, Yor340c, O6271 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: H Synonym: Rna Polymerases I,II,And III Subunit Abc3,Abc14.4, Dna-Directed Rna Polymerases I,And III 14.5 Kda Polypeptide Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpb8, Yor224c, Yor50-14 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerase I Subunit Rpa12 Chain: I Synonym: A12,A12.2,Dna-Directed Rna Polymerase I 13.7 Kda Polypeptide; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpa12, Rrn4, Yjr063w, J1747 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: J Synonym: Rna Polymerases I,II,And III Subunit Abc5,Abc10-Be Dna-Directed Rna Polymerases I,And III 8.3 Kda Polypeptide; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpb10, Yor210w Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp Chain: K Synonym: Rna Polymerases I And III Subunit Ac2,Ac19,Dna-Dir Polymerases I And III 16 Kda Polypeptide,Rpa19; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpc19, Ynl113w, N1937 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: L Synonym: Rna Polymerases I,II,And III Subunit Abc4,Abc10-Al Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpc10, Rpb12, Yhr143w-A, Yhr143bw Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Dna-Directed Rna Polymerase I Subunit Rpa34 Chain: N Synonym: A34,Dna-Directed Dna-Dependent Rna Polymerase 34.5 Polypeptide,A34.5; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rpa34, Yjl148w, J0637 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn3; Chain: O Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Atcc 204508 S288c Gene: Rrn3, Ykl125w Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn6; Chain: S Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Atcc 204508 S288c Gene: Rrn6, Ybl014c, Ybl0311, Ybl0312 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
Molecule: Rna Polymerase I-Specific Transcription Initiatio Rrn11; Chain: R Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Atcc 204508 S288c Gene: Rrn11, Yml043c, Ym9827.09c Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Template Strand Chain: T Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Synthetic Construct Expression_system_taxid: 32630
Molecule: Nontemplate Strand Chain: U Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Synthetic Construct Expression_system_taxid: 32630
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.50 Å
ligand	ZN	enzyme	Transferase E.C.2.7.7.6 BRENDA
Gene Ontology	Chain Function Process Component A B C D E RNA-directed 5'-3' RNA polym... F RNA-directed 5'-3' RNA polym... G H RNA-directed 5'-3' RNA polym... I J RNA-directed 5'-3' RNA polym... DNA-directed RNA polymerase ... K L RNA-directed 5'-3' RNA polym... M N O Q R RNA polymerase I CORE elemen... S RNA polymerase I CORE elemen...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (934 Kb) [Save to disk] Biological Unit Coordinates (6ruo.pdb1.gz) 918 Kb LPC: Ligand-Protein Contacts for 6RUO CSU: Contacts of Structural Units for 6RUO Retrieve 6RUO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6RUO from S2C, [Save to disk]

View 6RUO in 3D

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Visual 3D analysis of 6RUO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ruo_A] [6ruo_N] [6ruo_Q] [6ruo_F] [6ruo_M] [6ruo_I] [6ruo_J] [6ruo_S] [6ruo_O] [6ruo_R] [6ruo_T] [6ruo_D] [6ruo_G] [6ruo_H] [6ruo_E] [6ruo_B] [6ruo_C] [6ruo_L] [6ruo_U] [6ruo_K] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6RUO at PDBWiki (http://pdbwiki.org)

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