6RUV	Immune System	date	May 29, 2019
title	Structure Of The Scin Stabilized C3bbb Convertase Bound To P And A The Non-Inhibitory Nanobody Hfpnb1
authors	D.V.Pedersen, G.R.Andersen
compound		source
Molecule: Nanobody Hfpnb1 Chain: R, S Engineered: Yes		Organism_scientific: Lama Glama Organism_taxid: 9844 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Properdin Chain: U, X Synonym: Complement Factor P Engineered: Yes Other_details: Tsr2 Is Not Modelled And Therefore Missing R		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cfp, Pfc Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_variant: Hek293f
Molecule: Properdin Chain: V, Y Synonym: Complement Factor P Engineered: Yes Other_details: Properdin Tsr4-Tsr5-Tsr6 And A Few Additiona From Vector;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cfp, Pfc Expression_system: Homo Sapiens Expression_system_taxid: 9606
Molecule: Complement C3 Chain: A, G Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 1; Other_details: Beta-Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Complement C3 Chain: B, H Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 1; Other_details: Alpha-Prime Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Complement Factor B Chain: J, L Synonym: C3c5 Convertase,Glycine-Rich Beta Glycoprotein,Gb Properdin Factor B; Ec: 3.4.21.47 Engineered: Yes Other_details: Bb Fragment		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cfb, Bf, Bfd Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_variant: Hek293f
Molecule: Inhibitor Chain: N, Q Synonym: Involved In Expression Of Fibrinogen Binding Prote Associated,Staphylococcal Complement Inhibitor; Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Gene: Scn_3, Scn, Scn_2, Scn_4, Bn1321_320035, Cv021_13080, D1g05_09530, D1g09_13565, D1g21_11725, Ep54_10460, Eq90_139 Ers072840_02186, Nctc10654_02112, Nctc10702_03129, Nctc1319 Nctc13196_03045, Nctc6133_02657, Nctc7878_02651; Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.242 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.990 354.030 367.840 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	6.15 Å
ligand	BGC, FUC, MAN, MG, NAG	enzyme	Hydrolase E.C.3.4.21.47 BRENDA
Gene Ontology	Chain Function Process Component A, G H, B J, L

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1843 Kb) [Save to disk] Biological Unit Coordinates (6ruv.pdb1.gz) 1827 Kb LPC: Ligand-Protein Contacts for 6RUV CSU: Contacts of Structural Units for 6RUV Structure Factors (1226 Kb) Retrieve 6RUV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6RUV from S2C, [Save to disk]

View 6RUV in 3D

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Visual 3D analysis of 6RUV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ruv_V] [6ruv_R] [6ruv_X] [6ruv_U] [6ruv_S] [6ruv_H] [6ruv_B] [6ruv_N] [6ruv_J] [6ruv_L] [6ruv_Y] [6ruv_G] [6ruv_A] [6ruv_Q] SWISS-PROT database: Domain organization of by SWISSPFAM

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