6RV3 Membrane Protein date May 30, 2019
title Crystal Structure Of The Human Two Pore Domain Potassium Ion Task-1 (K2p3.1) In A Closed Conformation With A Bound Inhib 1000493
authors K.E.J.Rodstrom, A.C.W.Pike, W.Zhang, A.Quigley, D.Speedman, S.M.M.Mukhopadhyay, L.Shrestha, R.Chalk, S.Venkaya, S.R.Bushell A.Tessitore, N.Burgess-Brown, C.H.Arrowsmith, A.M.Edwards, C.Bo E.P.Carpenter, Structural Genomics Consortium (Sgc)
compound source
Molecule: Potassium Channel Subfamily K Member 3
Chain: A, B, C, D
Synonym: Acid-Sensitive Potassium Channel Protein Task-1,Tw Acid-Sensitive K(+) Channel 1,Two Pore Potassium Channel Kt Pore K(+) Channel Kt3.1;
Engineered: Yes
Other_details: Two-Pore Domain Potassium Channel K2p3.1 (Ta
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kcnk3, Task, Task1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 2 21 21
R_factor 0.235 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.070 204.500 239.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand DMU, K, KKQ, PC1, Y01 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA lower X-gate in TASK channels traps inhibitors within the vestibule., Rodstrom KEJ, Kiper AK, Zhang W, Rinne S, Pike ACW, Goldstein M, Conrad LJ, Delbeck M, Hahn MG, Meier H, Platzk M, Quigley A, Speedman D, Shrestha L, Mukhopadhyay SMM, Burgess-Brown NA, Tucker SJ, Muller T, Decher N, Carpenter EP, Nature. 2020 Jun;582(7812):443-447. doi: 10.1038/s41586-020-2250-8. Epub 2020 Apr, 29. PMID:32499642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (354 Kb) [Save to disk]
  • Biological Unit Coordinates (6rv3.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (6rv3.pdb2.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 6RV3
  • CSU: Contacts of Structural Units for 6RV3
  • Structure Factors (4272 Kb)
  • Retrieve 6RV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RV3 from S2C, [Save to disk]
  • View 6RV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RV3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rv3_D] [6rv3_A] [6rv3_B] [6rv3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RV3
  • Community annotation for 6RV3 at PDBWiki (http://pdbwiki.org)

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