6RWN Recombination date Jun 05, 2019
title Sivrcm Intasome In Complex With Dolutegravir
authors P.Cherepanov, A.Nans, N.Cook
compound source
Molecule: Pol Protein
Chain: A, E, N, L, K, J, I, M, F, D, C, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Simian Immunodeficiency Virus
Organism_taxid: 11723
Variant: Red Capped Mangabey Isolate From Cameroon
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Pc2

Molecule: Dna (5'- D(Apapcptpgpgptpapgpapgpaptptptptptpcptp C)-3');
Chain: Q, S
Engineered: Yes
Organism_scientific: Simian Immunodeficiency Virus
Organism_taxid: 11723
Variant: Sivrcmng409
Gene: U5 Ltr Vdna End
Expression_system: Synthetic Construct
Expression_system_taxid: 32630

Molecule: Dna (5'- D(Pgpcptpapapgpapapapapaptpcptpcptpapcpc
Chain: W, T
Engineered: Yes
Organism_scientific: Simian Immunodeficiency Virus
Organism_taxid: 11723
Variant: Sivrcmng409
Gene: U5 Ltr Vdna End
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.10 Å
ligand CL, DLU, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, M, C, D, I, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (343 Kb) [Save to disk]
  • Biological Unit Coordinates (6rwn.pdb1.gz) 325 Kb
  • LPC: Ligand-Protein Contacts for 6RWN
  • CSU: Contacts of Structural Units for 6RWN
  • Retrieve 6RWN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RWN from S2C, [Save to disk]
    • View 6RWN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RWN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rwn_J] [6rwn_M] [6rwn_N] [6rwn_K] [6rwn_T] [6rwn_W] [6rwn_C] [6rwn_Q] [6rwn_I] [6rwn_F] [6rwn_B] [6rwn_S] [6rwn_L] [6rwn_E] [6rwn_A] [6rwn_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RWN
  • Community annotation for 6RWN at PDBWiki (http://pdbwiki.org)

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