6RWY Protein Transport date Jun 06, 2019
title Export Apparatus Core And Inner Rod Of The Shigella Type 3 S System
authors M.Lunelli, A.Kamprad
compound source
Molecule: Inner Rod Protein
Chain: A, G, H, I, J, K
Other_details: Alanine Polypeptide Because Sequence Uncerta
 Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Variant: M90t

Molecule: Inner Rod Protein
Chain: B, C, D, E, F
Other_details: Alanine Polypeptide Because Sequence Uncerta
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Variant: M90t

Molecule: Protein Mxih
Chain: L, M, N, O, P, Q, R, S, T, U, V
Engineered: Yes
Other_details: N-Terminal Strep-Tag II And Factor Xa Cleave
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Variant: M90t
Gene: Mxih, Cp0137
Expression_system: Shigella Flexneri
Expression_system_taxid: 623
Expression_system_variant: M90t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pask-Iba5plus

Molecule: Surface Presentation Of Antigens Protein Spap
Chain: a, b, c, d, e
Synonym: Spa24 Protein
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Variant: M90t

Molecule: Surface Presentation Of Antigens Protein Spar
Chain: f
Synonym: Spa29 Protein
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Variant: M90t

Molecule: Surface Presentation Of Antigens Protein Spaq
Chain: g, h, I, j, k
Synonym: Protein Spa9
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Variant: M90t
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.11 Å
Gene
Ontology
ChainFunctionProcessComponent
S, T, N, V, Q, M, L, O, P, R, U


a, d, e, c, b


f


j, k, h, g, i


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk]
  • Biological Unit Coordinates (6rwy.pdb1.gz) 385 Kb
  • CSU: Contacts of Structural Units for 6RWY
  • Retrieve 6RWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RWY from S2C, [Save to disk]
    • View 6RWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RWY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rwy_D] [6rwy_H] [6rwy_U] [6rwy_c] [6rwy_E] [6rwy_O] [6rwy_S] [6rwy_C] [6rwy_N] [6rwy_k] [6rwy_b] [6rwy_i] [6rwy_P] [6rwy_J] [6rwy_G] [6rwy_h] [6rwy_R] [6rwy_e] [6rwy_T] [6rwy_L] [6rwy_V] [6rwy_Q] [6rwy_M] [6rwy_d] [6rwy_A] [6rwy_j] [6rwy_F] [6rwy_g] [6rwy_B] [6rwy_I] [6rwy_K] [6rwy_a] [6rwy_f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RWY
  • Community annotation for 6RWY at PDBWiki (http://pdbwiki.org)

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