6RYD	Dna Binding Protein	date	Jun 10, 2019
title	Wus-Hd Bound To Tgaa Dna
authors	J.J.Sloan, K.Wild, I.Sinning
compound		source
Molecule: Protein Wuschel Chain: A, B, E, F Synonym: Atwus,Plant Growth Activator 6 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: Wus, Pga6, At2g17950, T27k22.18 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Apgptpgptpaptpgpapaptpgpap 3'); Chain: C, G Engineered: Yes		Synthetic: Yes Organism_scientific: Arabidopsis Thaliana Organism_taxid: 3702
Molecule: Dna (5'-D(Cpgptptpcpaptptpcpaptpapcp 3'); Chain: D, H Engineered: Yes		Synthetic: Yes Organism_scientific: Arabidopsis Thaliana Organism_taxid: 3702
symmetry	Space Group: P 1 21 1	R_factor 0.187 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.740 54.340 75.560 90.00 107.54 90.00
method	X-Ray Diffraction	resolution	1.58 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B
Primary reference	Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL., Sloan J, Hakenjos JP, Gebert M, Ermakova O, Gumiero A, Stier G, Wild K, Sinning I, Lohmann JU, Nat Commun. 2020 May 6;11(1):2223. doi: 10.1038/s41467-020-16024-y. PMID:32376862

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk] Biological Unit Coordinates (6ryd.pdb1.gz) 75 Kb Biological Unit Coordinates (6ryd.pdb2.gz) 75 Kb LPC: Ligand-Protein Contacts for 6RYD CSU: Contacts of Structural Units for 6RYD Structure Factors (1496 Kb) Retrieve 6RYD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6RYD from S2C, [Save to disk]

View 6RYD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6RYD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ryd_G] [6ryd_D] [6ryd_A] [6ryd_F] [6ryd_E] [6ryd_C] [6ryd_B] [6ryd_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6RYD at PDBWiki (http://pdbwiki.org)

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