6S01 Transcription date Jun 13, 2019
title Structure Of Ledgf Pwwp Domain Bound H3k36 Methylated Nucleo
authors H.Wang, L.Farnung, C.Dienemann, P.Cramer
compound source
Molecule: Histone H3
Chain: A, E
Engineered: Yes
Other_details: Residue K36 Was Chemically Modified To Be Ml
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18002543mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: C, G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: D, H
Synonym: H2b1.1
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Wisdom 601 Dna (165-Mer)
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Wisdom 601 Dna (165-Mer)
Chain: J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Pc4 And Sfrs1-Interacting Protein
Chain: K
Synonym: Cll-Associated Antigen Kw-7,Dense Fine Speckles 70 Protein,Dfs 70,Lens Epithelium-Derived Growth Factor,Transc Coactivator P75p52;
Engineered: Yes
Other_details: Density Of Residue 30-34 And Residue 92-530 Invisible

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psip1, Dfs70, Ledgf, Psip2
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
ligand ML3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (6s01.pdb1.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 6S01
  • CSU: Contacts of Structural Units for 6S01
  • Retrieve 6S01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S01 from S2C, [Save to disk]
  • View 6S01 in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6S01
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6s01 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s01_I] [6s01_C] [6s01_J] [6s01_H] [6s01_K] [6s01_B] [6s01_F] [6s01_E] [6s01_A] [6s01_G] [6s01_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6S01
  • Community annotation for 6S01 at PDBWiki (http://pdbwiki.org)

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