6S24 Transferase date Jun 20, 2019
title Crystal Structure Of The Tggalnac-T3 In Complex With Udp, Ma And The Peptide 3
authors M.De Las Rivas, E.J.P.Daniel, Y.Narimatsu, I.Companon, K.Kato, P.Hermosilla, A.Thureau, L.Ceballos-Laita, H.Coelho, P.Bernado, F.Marcelo, L.Hansen, A.Lostao, F.Corzana, H.Clausen, T.A.Gerken, R.Hurtado-Guerrero
compound source
Molecule: Polypeptide N-Acetylgalactosaminyltransferase
Chain: A
Synonym: Protein-Udp Acetylgalactosaminyltransferase
Ec: 2.4.1.-
Engineered: Yes
 Organism_scientific: Taeniopygia Guttata
Organism_common: Zebra Finch
Organism_taxid: 59729
Gene: Galnt3
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922

Molecule: Ala-Thr-Gly-Ala-Gly-Ala-Gly-Ala-Gly-Thr-Thr-Pro-G
Chain: F
Engineered: Yes
Other_details: Atgagagagttpgp Note That This Is A Monoglyc And T Stands For T-O-Galnac
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.655 104.661 143.186 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.12 Å
ligand MN, NAG, NGA, PO4, TAM, UDP enzyme Transferase E.C.2.4.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (6s24.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 6S24
  • CSU: Contacts of Structural Units for 6S24
  • Structure Factors (1672 Kb)
  • Retrieve 6S24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S24 from S2C, [Save to disk]
    • View 6S24 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6S24
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s24_A] [6s24_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6S24
  • Community annotation for 6S24 at PDBWiki (http://pdbwiki.org)

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