6S3U Protein Binding date Jun 26, 2019
title Adhesin P140 From Mycoplasma Genitalium
authors I.Fita, D.Aparicio
compound source
Molecule: Adhesin P1
Chain: A, B, C, D, E, F
Synonym: Attachment Protein,Cytadhesin P1,Mgpa
Engineered: Yes
Organism_scientific: Mycoplasma Genitalium G37
Organism_taxid: 243273
Variant: Atcc 33530 G-37 Nctc 10195
Gene: Mgpa, Mg191
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.205
length a length b length c angle alpha angle beta angle gamma
459.190 116.660 285.640 90.00 124.20 90.00
method X-Ray Diffractionresolution 3.24 Å
F, A, D, C, E, B

Primary referenceStructure and mechanism of the Nap adhesion complex from the human pathogen Mycoplasma genitalium., Aparicio D, Scheffer MP, Marcos-Silva M, Vizarraga D, Sprankel L, Ratera M, Weber MS, Seybert A, Torres-Puig S, Gonzalez-Gonzalez L, Reitz J, Querol E, Pinol J, Pich OQ, Fita I, Frangakis AS, Nat Commun. 2020 Jun 8;11(1):2877. doi: 10.1038/s41467-020-16511-2. PMID:32513917
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2539 Kb) [Save to disk]
  • Biological Unit Coordinates (6s3u.pdb1.gz) 433 Kb
  • Biological Unit Coordinates (6s3u.pdb2.gz) 438 Kb
  • Biological Unit Coordinates (6s3u.pdb3.gz) 433 Kb
  • Biological Unit Coordinates (6s3u.pdb4.gz) 432 Kb
  • Biological Unit Coordinates (6s3u.pdb5.gz) 434 Kb
  • Biological Unit Coordinates (6s3u.pdb6.gz) 436 Kb
  • CSU: Contacts of Structural Units for 6S3U
  • Structure Factors (5326 Kb)
  • Retrieve 6S3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S3U from S2C, [Save to disk]
  • View 6S3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6S3U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6s3u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s3u_A] [6s3u_E] [6s3u_C] [6s3u_B] [6s3u_D] [6s3u_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6S3U
  • Community annotation for 6S3U at PDBWiki (http://pdbwiki.org)

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