6S5P Sugar Binding Protein date Jul 02, 2019
title Cfucosylated Peptide Sbl2 Bound To Fucose Binding Lectin Lec From Pseudomonas Aeruginosa At 1.46 Angstrom Resolution
authors S.Baeriswyl, A.Stocker, J.L.Reymond
compound source
Molecule: Fucose-Binding Lectin
Chain: A, B, C, D
Synonym: Fucose-Binding Lectin II (Pa-Iil),Fucose-Binding L Iil;
Engineered: Yes
Other_details: Fucose Binding Lectin Lecb (Pa-Lii) From Pse Aeruginosa;
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Lecb, C0044_25260, Caz10_21840, Dt376_00595, Dy979_15 Ecc04_10105, Efk27_13700, Egv95_09240, Egy23_15550, Ipc669_ Pa5486_01888, Paerug_e15_london_28_01_14_00983, Pamh19_1713 Rw109_rw109_02453;
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Sbl2
Chain: H, E, F
Engineered: Yes
Other_details: Sbl2 N-Terminally Fucosylated Peptide Linker
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 2
R_factor 0.177 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.099 56.264 70.498 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand CA, NH2, ZDC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (6s5p.pdb1.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 6S5P
  • CSU: Contacts of Structural Units for 6S5P
  • Structure Factors (1461 Kb)
  • Retrieve 6S5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S5P from S2C, [Save to disk]
    • View 6S5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6S5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s5p_D] [6s5p_F] [6s5p_B] [6s5p_E] [6s5p_A] [6s5p_H] [6s5p_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6S5P
  • Community annotation for 6S5P at PDBWiki (http://pdbwiki.org)

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