6S73 Cell Cycle date Jul 04, 2019
title Crystal Structure Of Nek7 Srs Mutant Bound To Compound 51
authors N.Nasir, M.J.Byrne, C.Bhatia, R.Bayliss
compound source
Molecule: Serinethreonine-Protein Kinase Nek7
Chain: A, B, C, D
Synonym: Never In Mitosis A-Related Kinase 7,Nima-Related P Kinase 7;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nek7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.420 169.082 83.730 90.00 92.81 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand F9N enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceNek7 conformational flexibility and inhibitor binding probed through protein engineering of the R-spine., Byrne MJ, Nasir N, Basmadjian C, Bhatia C, Cunnison RF, Carr KH, Mas-Droux C, Yeoh S, Cano C, Bayliss R, Biochem J. 2020 Apr 30;477(8):1525-1539. doi: 10.1042/BCJ20200128. PMID:32242624
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (6s73.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (6s73.pdb2.gz) 77 Kb
  • Biological Unit Coordinates (6s73.pdb3.gz) 73 Kb
  • Biological Unit Coordinates (6s73.pdb4.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 6S73
  • CSU: Contacts of Structural Units for 6S73
  • Structure Factors (367 Kb)
  • Retrieve 6S73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S73 from S2C, [Save to disk]
  • View 6S73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6S73
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s73_A] [6s73_D] [6s73_B] [6s73_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6S73
  • Community annotation for 6S73 at PDBWiki (http://pdbwiki.org)

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