6S8L Structural Protein date Jul 10, 2019
title Structure, Thermodynamics, And Kinetics Of Plinabulin Bindin Tubulin Isotypes
authors A.Sharma, N.Olieric, M.Steinmetz
compound source
Molecule: Tubulin Alpha-1b Chain
Chain: A
Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tuba1b
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five Cells

Molecule: Tubulin Beta-3 Chain
Chain: B
Synonym: Tubulin Beta-4 Chain,Tubulin Beta-III
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tubb3, Tubb4
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five Cells

Molecule: Designed Ankyrin Repeat Protein (Darpin) D1
Chain: F
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.215 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.630 91.200 82.640 90.00 97.49 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • netrin receptor binding


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk]
  • Biological Unit Coordinates (6s8l.pdb1.gz) 342 Kb
  • CSU: Contacts of Structural Units for 6S8L
  • Structure Factors (920 Kb)
  • Retrieve 6S8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S8L from S2C, [Save to disk]
  • View 6S8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6S8L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6s8l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s8l_A] [6s8l_B] [6s8l_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6S8L
  • Community annotation for 6S8L at PDBWiki (http://pdbwiki.org)

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