6SA5 Immune System date Jul 16, 2019
title Salsa Dmbt1 Gp340 Srcr Domain 8
authors M.P.Reichhardt, S.Johnson, V.Loimaranta, S.M.Lea
compound source
Molecule: Deleted In Malignant Brain Tumors 1 Protein
Chain: A
Synonym: Glycoprotein 340,Gp-340,Hensin,Salivary Agglutinin Surfactant Pulmonary-Associated D-Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dmbt1, Gp340
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
symmetry Space Group: P 21 21 21
R_factor 0.155 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.816 40.815 62.989 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.29 Å
ligand GOL, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (6sa5.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 6SA5
  • CSU: Contacts of Structural Units for 6SA5
  • Structure Factors (540 Kb)
  • Retrieve 6SA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SA5 from S2C, [Save to disk]
  • View 6SA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SA5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sa5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SA5
  • Community annotation for 6SA5 at PDBWiki (http://pdbwiki.org)

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