6SAN Immune System date Jul 17, 2019
title Salsa Dmbt1 Gp340 Srcr Domain 8 Soaked In Calcium And Ma
authors M.P.Reichhardt, S.Johnson, V.Loimaranta, S.M.Lea
compound source
Molecule: Deleted In Malignant Brain Tumors 1 Protein
Chain: A, B
Synonym: Glycoprotein 340,Gp-340,Hensin,Salivary Agglutinin Surfactant Pulmonary-Associated D-Binding Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dmbt1, Gp340
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.235 46.643 93.628 90.00 97.37 90.00
method X-Ray Diffractionresolution 1.36 Å
ligand CL, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (6san.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 6SAN
  • CSU: Contacts of Structural Units for 6SAN
  • Structure Factors (1241 Kb)
  • Retrieve 6SAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SAN from S2C, [Save to disk]
    • View 6SAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6SAN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6san_A] [6san_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6SAN
  • Community annotation for 6SAN at PDBWiki (http://pdbwiki.org)

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