6SEI Dna Binding Protein date Jul 30, 2019
title Recognition And Processing Of Branched Dna Substrates By Slx Nuclease
authors V.Gaur, W.Zajko, S.Nirwal, A.Szlachcic, M.Gapinska, M.Nowotny
compound source
Molecule: Structure-Specific Endonuclease Subunit Slx1
Chain: A, C
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Thielavia Terrestris
Organism_taxid: 35720
Gene: Slx1, Thite_2107775
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Structure-Specific Endonuclease Subunit Slx4
Chain: B, D
Engineered: Yes
Organism_scientific: Thielavia Terrestris
Organism_taxid: 35720
Gene: Slx4, Tt172_locus87
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (32-Mer)
Chain: E
Engineered: Yes
Other_details: Random Sequence
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.075 92.700 93.251 90.00 91.60 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand CA, ZN enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • nuclease activity
  • endonuclease activity


    • D, B


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (6sei.pdb1.gz) 258 Kb
  • LPC: Ligand-Protein Contacts for 6SEI
  • CSU: Contacts of Structural Units for 6SEI
  • Structure Factors (165 Kb)
  • Retrieve 6SEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SEI from S2C, [Save to disk]
    • View 6SEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6SEI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sei_D] [6sei_E] [6sei_A] [6sei_B] [6sei_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6SEI
  • Community annotation for 6SEI at PDBWiki (http://pdbwiki.org)

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