6SPK	Oxidoreductase	date	Sep 01, 2019
title	A4v Mutant Of Human Sod1 With Ebselen Derivative 6
authors	V.Chantadul, K.Amporndanai, G.Wright, M.Shahid, S.Antonyuk, S.Has
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B, E, F, I, J Synonym: Superoxide Dismutase 1,Hsod1 Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.211 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.663 195.546 76.340 90.00 98.08 90.00
method	X-Ray Diffraction	resolution	2.77 Å
ligand	CL, DMS, GOL, LQN, NA, SO4, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, I, E, B superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk] Biological Unit Coordinates (6spk.pdb1.gz) 51 Kb Biological Unit Coordinates (6spk.pdb2.gz) 52 Kb Biological Unit Coordinates (6spk.pdb3.gz) 51 Kb LPC: Ligand-Protein Contacts for 6SPK CSU: Contacts of Structural Units for 6SPK Structure Factors (1827 Kb) Retrieve 6SPK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6SPK from S2C, [Save to disk]

View 6SPK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6SPK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6spk_F] [6spk_B] [6spk_I] [6spk_E] [6spk_A] [6spk_J] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6SPK

Community annotation for 6SPK at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---