6SPZ Structural Protein date Sep 03, 2019
title Crystal Structure Of Pdz1-2 From Psd-95 With Peptide Ligand Rresei Bound To Both Domains
authors N.Rodzli, C.W.Levy, S.M.Prince
compound source
Molecule: Disks Large Homolog 4
Chain: A
Synonym: Postsynaptic Density Protein 95,Psd-95,Synapse-Ass Protein 90,Sap90;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlg4, Psd95
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Popinf

Molecule: Arg-Arg-Glu-Ser-Glu-Ile
Chain: P, Q
Engineered: Yes
Other_details: Syntheic Peptide

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: I 41
R_factor 0.200 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.500 50.500 176.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.08 Å
ligand GSH enzyme
Primary referenceThe Dual PDZ Domain from Postsynaptic Density Protein 95 Forms a Scaffold with Peptide Ligand., Rodzli NA, Lockhart-Cairns MP, Levy CW, Chipperfield J, Bird L, Baldock C, Prince SM, Biophys J. 2020 Jun 26. pii: S0006-3495(20)30494-X. doi:, 10.1016/j.bpj.2020.06.018. PMID:32652058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (6spz.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 6SPZ
  • CSU: Contacts of Structural Units for 6SPZ
  • Structure Factors (218 Kb)
  • Retrieve 6SPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SPZ from S2C, [Save to disk]
  • View 6SPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SPZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6spz_P] [6spz_Q] [6spz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SPZ
  • Community annotation for 6SPZ at PDBWiki (http://pdbwiki.org)

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