6T0B Oxidoreductase date Oct 02, 2019
title The Iii2-Iv(5b)2 Respiratory Supercomplex From S. Cerevisiae
authors A.Marechal, N.Pinotsis, A.Hartley
compound source
Molecule: Cytochrome B-C1 Complex Subunit 1, Mitochondrial
Chain: A, L
Synonym: Complex III Subunit 1,Core Protein I,Ubiquinol-Cyt Reductase Complex Core Protein 1;
Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 2, Mitochondrial
Chain: B, M
Synonym: Complex III Subunit 2,Core Protein II,Ubiquinol-Cy Reductase Complex Core Protein 2;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B
Chain: C, N
Synonym: Complex III Subunit 3,Complex III Subunit Cytb,Com Subunit III,Cytochrome B-C1 Complex Subunit 3,Cytochrome B- Subunit Cytb,Ubiquinol-Cytochrome-C Reductase Complex Cytoc Subunit;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C1, Heme Protein, Mitochondrial
Chain: D, O
Synonym: Complex III Subunit 4,Complex III Subunit Iv,Cytoc Complex Subunit 4,Ubiquinol-Cytochrome-C Reductase Complex C1 Subunit,Cytochrome C-1;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: E, P
Synonym: Complex III Subunit 5,Rieske Iron-Sulfur Protein,R Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subunit;
Ec: 7.1.1.8

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 6
Chain: F, Q
Synonym: Complex III Subunit 6,Complex III Subunit Vi,Cytoc Non-Heme 17 Kda Protein,Mitochondrial Hinge Protein,Ubiquin Cytochrome C Reductase Complex 17 Kda Protein;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 7
Chain: G, R
Synonym: Complex III Subunit 7,Complex III Subunit Vii,Ubiq Cytochrome C Reductase C Reductase Complex 14 Kda Protein;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 8
Chain: H, S
Synonym: Complex III Subunit 8,Complex III Subunit Vii,Ubiq Cytochrome C Reductase Complex 11 Kda Protein,Ubiquinol-Cyt Reductase Complex Ubiquinone-Binding Protein Qp-C;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 9
Chain: I, T
Synonym: Complex III Subunit 9,Complex III Subunit X,Cytoch Non-Heme 7.3 Kda Protein,Ubiquinol-Cytochrome C Reductase C Kda Protein;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome B-C1 Complex Subunit 10
Chain: J, U
Synonym: Complex III Subunit 10,Complex III Subunit Xi,Ubiq Cytochrome C Reductase Complex 8.5 Kda Protein;

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 1
Chain: a, n
Synonym: Cytochrome C Oxidase Polypeptide I
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 2
Chain: b, o
Synonym: Cytochrome C Oxidase Polypeptide II
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 3
Chain: c, p
Synonym: Cytochrome C Oxidase Polypeptide III
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 4, Mitochondrial
Chain: d, q
Synonym: Cytochrome C Oxidase Polypeptide Iv
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Polypeptide 5b, Mitochondria
Chain: e, r
Synonym: Cytochrome C Oxidase Polypeptide Vb
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 6, Mitochondrial
Chain: f, s
Synonym: Cytochrome C Oxidase Polypeptide Vi
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 7
Chain: g, t
Synonym: Cytochrome C Oxidase Polypeptide Vii
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Polypeptide Viii, Mitochondr
Chain: h, u
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 7a
Chain: I, v
Synonym: Cytochrome C Oxidase Polypeptide Viia
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 6b
Chain: j, w
Synonym: Cytochrome C Oxidase Polypeptide Vib
Ec: 1.9.3.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Cytochrome C Oxidase Subunit 6a, Mitochondrial
Chain: k, x
Synonym: Cytochrome C Oxidase Polypeptide Via
Ec: 1.9.3.1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Gene: Cox13, Ygl191w, G1341
Expression_system: Saccharomyces Cerevisiae S288c
Expression_system_taxid: 559292
Expression_system_variant: W303-1b

Molecule: Cox26
Chain: l, y

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Respiratory Supercomplex Factor 2, Mitochondrial
Chain: m, z
Synonym: Altered Inheritance Of Mitochondria Protein 38

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.80 Å
ligand CA, CDL, CU, CUA, FES, HEA, HEC, HEM, MG, PCF, PEF, ZN enzyme E.C.7.1.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B, M


D, O


E, P


F, Q


G, R


J, U


L, A
  • ubiquinol-cytochrome-c reduc...


  • N, C


    S, H


    T, I


    a, n


    b, o
  • cytochrome-c oxidase activit...


  • c, p
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


  • d, q


    e, r


    g, t
  • cytochrome-c oxidase activit...


  • j, w
  • cytochrome-c oxidase activit...


  • k, x
  • cytochrome-c oxidase activit...
  • enzyme regulator activity


  • s, f


    u, h


    v, i
  • cytochrome-c oxidase activit...


  • y, l


    z, m


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1191 Kb) [Save to disk]
  • Biological Unit Coordinates (6t0b.pdb1.gz) 1162 Kb
  • LPC: Ligand-Protein Contacts for 6T0B
  • CSU: Contacts of Structural Units for 6T0B
  • Retrieve 6T0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6T0B from S2C, [Save to disk]
  • View 6T0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6T0B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6t0b_j] [6t0b_w] [6t0b_A] [6t0b_Q] [6t0b_S] [6t0b_p] [6t0b_x] [6t0b_b] [6t0b_D] [6t0b_T] [6t0b_B] [6t0b_M] [6t0b_h] [6t0b_z] [6t0b_l] [6t0b_U] [6t0b_s] [6t0b_H] [6t0b_r] [6t0b_d] [6t0b_n] [6t0b_F] [6t0b_i] [6t0b_g] [6t0b_v] [6t0b_a] [6t0b_o] [6t0b_J] [6t0b_u] [6t0b_I] [6t0b_q] [6t0b_t] [6t0b_y] [6t0b_R] [6t0b_O] [6t0b_e] [6t0b_k] [6t0b_G] [6t0b_P] [6t0b_L] [6t0b_C] [6t0b_m] [6t0b_f] [6t0b_N] [6t0b_E] [6t0b_c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6T0B
  • Community annotation for 6T0B at PDBWiki (http://pdbwiki.org)

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