6T8H	Replication	date	Oct 24, 2019
title	Cryo-Em Structure Of The Dna-Bound Pold-Pcna Processive Comp P. Abyssi
authors	C.Madru, P.Raia, I.Hugonneau Beaufet, G.Pehau-Arnaudet, P.Englan E.Lindhal, M.Delarue, M.Carroni, L.Sauguet
compound		source
Molecule: Dna Polymerase Sliding Clamp Chain: E, C, D Synonym: Proliferating Cell Nuclear Antigen Homolog,Pcna Engineered: Yes		Organism_scientific: Pyrococcus Abyssi (Strain Ge5 Orsay) Organism_taxid: 272844 Strain: Ge5 Orsay Gene: Pcn, Pyrab13790, Pab1465 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Polymerase II Small Subunit Chain: A Synonym: Pol II,Exodeoxyribonuclease Small Subunit Ec: 2.7.7.7,3.1.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Pyrococcus Abyssi (Strain Ge5 Orsay) Organism_taxid: 272844 Strain: Ge5 Orsay Gene: Polb, Pyrab01210, Pab2266 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dp2 Subunit Of D-Family Dna-Polymerase Chain: B Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Pyrococcus Abyssi Organism_taxid: 29292 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Primer Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Template Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.77 Å
ligand	FE, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A DNA-directed DNA polymerase ... B D, C, E DNA polymerase processivity ...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk] Biological Unit Coordinates (6t8h.pdb1.gz) 351 Kb LPC: Ligand-Protein Contacts for 6T8H CSU: Contacts of Structural Units for 6T8H Retrieve 6T8H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6T8H from S2C, [Save to disk]

View 6T8H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6T8H

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6t8h_E] [6t8h_P] [6t8h_D] [6t8h_A] [6t8h_T] [6t8h_B] [6t8h_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6T8H

Community annotation for 6T8H at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---