6T9L SAGA DUB module bound to a ubiqitinated nucleosome date
authors Wang, H., Cramer, P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


L
  • enzyme activator activity


  • M
  • enzyme activator activity


  • N
  • enzyme activator activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (6t9l.pdb1.gz) 319 Kb
  • LPC: Ligand-Protein Contacts for 6T9L
  • CSU: Contacts of Structural Units for 6T9L
  • Retrieve 6T9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6T9L from S2C, [Save to disk]
  • View 6T9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6T9L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6t9l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6t9l_J] [6t9l_A] [6t9l_F] [6t9l_E] [6t9l_D] [6t9l_B] [6t9l_G] [6t9l_C] [6t9l_K] [6t9l_O] [6t9l_I] [6t9l_H] [6t9l_M] [6t9l_L] [6t9l_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6T9L
  • Community annotation for 6T9L at PDBWiki (http://pdbwiki.org)

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