6TAV Hydrolase date Oct 30, 2019
title Crystal Structure Of Endopeptidase-Induced Alpha2-Macroglobu
authors F.X.Gomis-Ruth, S.Duquerroy, S.Trapani, A.Marrero, T.Goulas, T.Gu G.A.Andersen, L.Sottrup-Jensen, J.Navaza
compound source
Molecule: Alpha-2-Macroglobulin
Chain: A, B, C, D
Synonym: Alpha-2-M,C3 And Pzp-Like Alpha-2-Macroglobulin Do Containing Protein 5;
Engineered: Yes
Other_details: Residue Gln975 Of The Protein According To U P01023 Is Chemically Modified To Meq975 By Reaction With Me
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: A2m, Cpamd5, Fwp007
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.800 260.300 281.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.20 Å
ligand BMA, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3420 Kb) [Save to disk]
  • Biological Unit Coordinates (6tav.pdb1.gz) 3320 Kb
  • LPC: Ligand-Protein Contacts for 6TAV
  • CSU: Contacts of Structural Units for 6TAV
  • Structure Factors (591 Kb)
  • Retrieve 6TAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TAV from S2C, [Save to disk]
  • View 6TAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TAV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6tav from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tav_D] [6tav_B] [6tav_C] [6tav_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TAV
  • Community annotation for 6TAV at PDBWiki (http://pdbwiki.org)

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