6TBM Transcription date Nov 01, 2019
title Structure Of Saga Bound To Tbp, Including Spt8 And Dub
authors G.Papai, A.Frechard, O.Kolesnikova, C.Crucifix, P.Schultz, A.Ben-
compound source
Molecule: Tata-Box Binding Protein (Tbp)
Chain: M
Engineered: Yes
 Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Gene: Spt15
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcriptional Coactivator Hfi1ada1
Chain: A
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit Of Saga Histone Acetyltransferase Complex
Chain: C
Engineered: Yes
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast, Pichia Pastoris
Organism_taxid: 644223
Strain: Gs115 Atcc 20864
Gene: Pas_chr1-4_0651
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Spt20
Chain: F
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit Of The Saga And Saga-Like Transcriptional Regulatory Complexes, Interacts With Spt15p To Act;
Chain: D
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit Of The Saga Transcriptional Regulatory Co Involved In Proper Assembly Of The Complex;
Chain: E
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Transcription Initiation Factor Tfiid Subunit 10
Chain: J
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (6168 Kda) Of Tfiid And Saga Complexes
Chain: K
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (90 Kda) Of Tfiid And Saga Complexes
Chain: G
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (60 Kda) Of Tfiid And Saga Complexes
Chain: H
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (17 Kda) Of Tfiid And Saga Complexes, Inv Rna Polymerase II Transcription Initiation;
Chain: I
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Transcription-Associated Protein
Chain: L
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Transcriptional Regulator Involved In Glucose Rep Gal4p-Regulated Genes;
Chain: B
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Spt8
Chain: N
Organism_scientific: Komagataella Phaffii Gs115
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Polyubiquitin-B
Chain: R
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ubiquitin Carboxyl-Terminal Hydrolase
Chain: Q
Ec: 3.4.19.12
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Saga-Associated Factor 11
Chain: O
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Transcription And Mrna Export Factor Sus1
Chain: P
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 20.00 Å
ligand GLZ enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F
  • transcription cofactor activ...


    • G


    H


    I


    J


    K


    L


    M


    O


    P
  • enzyme activator activity


    • Q


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (940 Kb) [Save to disk]
  • Biological Unit Coordinates (6tbm.pdb1.gz) 893 Kb
  • LPC: Ligand-Protein Contacts for 6TBM
  • CSU: Contacts of Structural Units for 6TBM
  • Retrieve 6TBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TBM from S2C, [Save to disk]
    • View 6TBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6TBM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tbm_G] [6tbm_F] [6tbm_L] [6tbm_H] [6tbm_K] [6tbm_B] [6tbm_N] [6tbm_A] [6tbm_J] [6tbm_P] [6tbm_C] [6tbm_R] [6tbm_E] [6tbm_M] [6tbm_O] [6tbm_Q] [6tbm_I] [6tbm_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6TBM
  • Community annotation for 6TBM at PDBWiki (http://pdbwiki.org)

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