6TC9 Dna Binding Protein date Nov 05, 2019
title Crystal Structure Of Mutm From Neisseria Meningitidis
authors J.Silhan, B.Landova, E.Boura
compound source
Molecule: Dna Containing Abasic Site Analogue
Chain: D, G
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Formamidopyrimidine-Dna Glycosylase
Chain: A, C
Synonym: Fapy-Dna Glycosylase,Dna-(Apurinic Or Apyrimidinic Lyase Mutm,Ap Lyase Mutm;
Ec: 3.2.2.23,4.2.99.18
Engineered: Yes

Organism_scientific: Neisseria Meningitidis Alpha522
Organism_taxid: 996307
Gene: Mutm, Fpg, Nmalpha522_0971
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna
Chain: B, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.770 80.380 83.620 90.00 89.95 90.00
method X-Ray Diffractionresolution 2.18 Å
ligand 3DR, MG, ZN enzyme Hydrolase E.C.3.2.2.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceConformational changes of DNA repair glycosylase MutM triggered by DNA binding., Landova B, Silhan J, FEBS Lett. 2020 Jun 29. doi: 10.1002/1873-3468.13876. PMID:32598485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (6tc9.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (6tc9.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 6TC9
  • CSU: Contacts of Structural Units for 6TC9
  • Structure Factors (841 Kb)
  • Retrieve 6TC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TC9 from S2C, [Save to disk]
  • View 6TC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TC9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tc9_C] [6tc9_D] [6tc9_F] [6tc9_G] [6tc9_B] [6tc9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TC9
  • Community annotation for 6TC9 at PDBWiki (http://pdbwiki.org)

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