6TD2 Mus musculus Acetylcholinesterase in complex with N-(2-(diethylamino)ethyl)-1-(4-(trifluoromethyl)phenyl)methanesulfonamide date
authors Forsgren, N., Ekstrom, F.
compound source
symmetry
R_factor
R_Free 0.215251914175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand EDO, ETE, N2K, NAG, PE4, PG0 enzyme
Primary referencePhysical Mechanisms Governing Substituent Effects on Arene-Arene Interactions in a Protein Milieu., Andersson CD, Mishra BK, Forsgren N, Ekstrom F, Linusson A, J Phys Chem B. 2020 Jul 30;124(30):6529-6539. doi: 10.1021/acs.jpcb.0c03778. Epub, 2020 Jul 20. PMID:32610016
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • Biological Unit Coordinates (6td2.pdb1.gz) 351 Kb
  • LPC: Ligand-Protein Contacts for 6TD2
  • CSU: Contacts of Structural Units for 6TD2
  • Structure Factors (2566 Kb)
  • Retrieve 6TD2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TD2 from S2C, [Save to disk]
  • View 6TD2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TD2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a6td2, region D:114-213 [Jmol] [rasmolscript] [script source]
  • Fold representative 6td2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6td2_A] [6td2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TD2
  • Community annotation for 6TD2 at PDBWiki (http://pdbwiki.org)

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