6THG Viral Protein date Nov 20, 2019
title Cedar Virus Attachment Glycoprotein (G) In Complex With Huma B1
authors R.Pryce, I.Rissanen, K.Harlos, T.Bowden
compound source
Molecule: Attachment Glycoprotein
Chain: B, A, E, G, I
Engineered: Yes
Organism_scientific: Cedar Virus
Organism_taxid: 1221391
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_atcc_number: Crl-3216
Expression_system_organ: Kidney
Expression_system_plasmid: Phl-Sec

Molecule: Ephrin-B1
Chain: D, C, F, H, J
Synonym: Efl-3,Elk Ligand,Elk-L,Eph-Related Receptor Tyrosi Ligand 2,Lerk-2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Efnb1, Efl3, Eplg2, Lerk2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_atcc_number: Crl-3216
Expression_system_organ: Kidney
Expression_system_plasmid: Phl-Sec
symmetry Space Group: P 21 21 21
R_factor 0.276 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.796 138.435 235.394 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.07 Å
ligand BMA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, B, I, G


F, J, H, C, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (981 Kb) [Save to disk]
  • Biological Unit Coordinates (6thg.pdb1.gz) 968 Kb
  • LPC: Ligand-Protein Contacts for 6THG
  • CSU: Contacts of Structural Units for 6THG
  • Structure Factors (1279 Kb)
  • Retrieve 6THG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6THG from S2C, [Save to disk]
  • View 6THG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6THG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6thg_G] [6thg_F] [6thg_D] [6thg_H] [6thg_J] [6thg_I] [6thg_C] [6thg_A] [6thg_B] [6thg_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6THG
  • Community annotation for 6THG at PDBWiki (http://pdbwiki.org)

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