6TM1 Signaling Protein date Dec 03, 2019
title Crystal Structure Of The Dhr2 Domain Of Dock10 In Complex Wi
authors D.Barford, D.Fan, N.Cronin, J.Yang
compound source
Molecule: Dedicator Of Cytokinesis Protein 10
Chain: B
Synonym: Zizimin-3
Engineered: Yes
Other_details: Stpelrrtwlesmakiharngdlseaamcyihiaaliaeylkrkgywkvekictaslls Llttpsggsmfsmgwpaflsitpnikeegamkedsgmqdtpynenilveqlymcveflw Vnkpiiavfekqrdfkklsdlyydihrsylkvaevvnsekrlfgryyrvafygqgffee Eegkeyiykepkltglseisqrllklyadkfgadnvkiiqdsnkvnpkdldpkyayiqv Eiedrktdfemhhninrfvfetpftlsgkkh Ggvaeqckrrtilttshlfpyvkkriqvisqsstelnpievaidemskkvselnqlctm Klqgsvsvkvnagpmayarafleetnakkyp Dnqvkllkeifrqfadacgq Aldvne Edqleyqeel Rshykdmlse Lstvmneqit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dock10, Kiaa0694, Ziz3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834

Molecule: Ras-Related C3 Botulinum Toxin Substrate 3
Chain: A
Synonym: P21-Rac3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rac3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834

Molecule: Dedicator Of Cytokinesis Protein 10
Chain: C
Synonym: Zizimin-3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dock10, Kiaa0694, Ziz3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
symmetry Space Group: I 2 2 2
R_factor 0.260 R_Free 0.321
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.079 128.455 215.102 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.71 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • synaptic transmission, GABAe...

  • C, B


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (6tm1.pdb1.gz) 138 Kb
  • CSU: Contacts of Structural Units for 6TM1
  • Structure Factors (453 Kb)
  • Retrieve 6TM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TM1 from S2C, [Save to disk]
  • View 6TM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TM1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6tm1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tm1_A] [6tm1_B] [6tm1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TM1
  • Community annotation for 6TM1 at PDBWiki (http://pdbwiki.org)

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