6TQN Transcription date Dec 17, 2019
title Rrn Anti-Termination Complex Without S4
authors Y.H.Huang, M.C.Wahl, B.Loll, T.Hilal, N.Said
compound source
Molecule: Inositol Monophosphatase
Chain: T
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: B9s25_006930
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Inositol-1-Monophosphatase
Chain: S
Synonym: Inositol-1-Phosphatase
Ec: 3.1.3.25
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Suhb, Ssya, B2533, Jw2517
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Terminationantitermination Protein
Chain: A
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Nusa, Ccu01_003250
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Antitermination Protein Nusb
Chain: B
Synonym: Antitermination Factor Nusb
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Nusb, Ccu01_023355
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: 30s Ribosomal Protein S10
Chain: E
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsj, Ad31_3986
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Transcription Terminationantitermination Protein
Chain: G
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Nusg, Hmpref1611_01657
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: U, V
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: W
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoz, B3649, Jw3624
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: X
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpob, Z5560, Ecs4910
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: Y
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoc, A1ws_04718
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Rrngnut
Chain: R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Tdna
Chain: L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Ntdna
Chain: K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand MG, ZN enzyme Hydrolase E.C.3.1.3.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


G


S, T


V, U


W


X


Y


Primary referenceStructure-Based Mechanisms of a Molecular RNA Polymerase/Chaperone Machine Required for Ribosome Biosynthesis., Huang YH, Hilal T, Loll B, Burger J, Mielke T, Bottcher C, Said N, Wahl MC, Mol Cell. 2020 Sep 17;79(6):1024-1036.e5. doi: 10.1016/j.molcel.2020.08.010. Epub, 2020 Aug 31. PMID:32871103
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (717 Kb) [Save to disk]
  • Biological Unit Coordinates (6tqn.pdb1.gz) 700 Kb
  • LPC: Ligand-Protein Contacts for 6TQN
  • CSU: Contacts of Structural Units for 6TQN
  • Retrieve 6TQN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TQN from S2C, [Save to disk]
  • View 6TQN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TQN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6tqn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tqn_U] [6tqn_Y] [6tqn_S] [6tqn_L] [6tqn_G] [6tqn_V] [6tqn_R] [6tqn_W] [6tqn_K] [6tqn_B] [6tqn_A] [6tqn_X] [6tqn_T] [6tqn_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TQN
  • Community annotation for 6TQN at PDBWiki (http://pdbwiki.org)

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