6TT8 Metal Binding Protein date Dec 25, 2019
title Haddock Model Of Ndm-1morin Complex
authors G.Riviere, S.Oueslati, M.Gayral, J.B.Crechet, N.Nhiri, E.Jacquet, J.C.Cintrat, F.Giraud, C.Van Heijenoort, E.Lescop, S.Pethe, B.I. T.Naas, E.Guittet, N.Morellet
compound source
Molecule: Metallo Beta Lactamase Ndm-1
Chain: A
Synonym: Metallo Beta-Lactamase,Metallo-Beta-Lactamase,Ndm- Carbapenemase,Ndm-1 Metallo-Beta-Lactamase,Ndm1 Metallo-Bet Lactamase,New Delhi Metallo Carbapenemase-1,New Delhi Metal Lactamse 1,Subclass B1 Metallo-Beta-Lactamase Ndm-1;
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Blandm-1, Bla Ndm-1, Blandm-1_1, Blandm-1_2, Blandm-1 Blandm1, Ndm-1, Banra_05884, C3483_29595, C7v41_28630, D647 Ec13450_007, Faq72_26810, Faq97_27095, Fas39_27275, Nctc134 P2146_00143, Pcre380_21, Pmk1_ndm00067, Pmk1_ndm00076, Pmk1_ndm00085, Pn11x00042ndm_090, Pndm-Sx04_5, Pndm10469_13 Samea3531848_05178, Tr3_031, Tr4_031;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand MRI, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3136 Kb) [Save to disk]
  • Biological Unit Coordinates (6tt8.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 6TT8
  • CSU: Contacts of Structural Units for 6TT8
  • Original NMR restraints for 6TT8 from PDB
  • Retrieve 6TT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TT8 from S2C, [Save to disk]
  • View 6TT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TT8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6tt8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tt8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TT8
  • Community annotation for 6TT8 at PDBWiki (http://pdbwiki.org)

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