6TTU | Ligase | date | Dec 30, 2019 |
||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
title | Ubiquitin Ligation To Substrate By A Cullin-Ring E3 Ligase A Resolution: Nedd8-Cul1-Rbx1 N98r-Skp1-Monomeric B-Trcp1dd-I Ub~Ube2d2 | ||||||||||||||||||||||||||||||
authors | K.Baek, J.R.Prabu, B.A.Schulman | ||||||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||||||
Molecule: F-Boxwd Repeat-Containing Protein 1a Chain: T Synonym: E3rsikappab,Epididymis Tissue Protein Li 2a,F-Box Repeats Protein Beta-Trcp,Pikappabalpha-E3 Receptor Subunit Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Btrc, Btrcp, Fbw1a, Fbxw1a Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||
Molecule: S-Phase Kinase-Associated Protein 1 Chain: S Synonym: Cyclin-Acdk2-Associated Protein P19,P19a,Organ Of Protein 2,Ocp-2,Organ Of Corti Protein II,Ocp-II,Rna Polyme Elongation Factor-Like Protein,Siii,Transcription Elongatio Polypeptide 1-Like,P19skp1; Engineered: Yes Other_details: Skp1 Contains Truncations Of Residues 38-43, |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Skp1, Emc19, Ocp2, Skp1a, Tceb1l Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||
Molecule: Cullin-1 Chain: C Synonym: Cul-1 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cul1 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||
Molecule: Nedd8 Chain: N Synonym: Neddylin,Neural Precursor Cell Expressed Developme Down-Regulated Protein 8,Nedd-8,Ubiquitin-Like Protein Nedd Engineered: Yes Other_details: Residue 1, Ser, Comes From The Linker. Nedd8 Starts From Met.; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nedd8 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||
Molecule: E3 Ubiquitin-Protein Ligase Rbx1 Chain: R Synonym: E3 Ubiquitin-Protein Transferase Rbx1,Protein Zyp, Finger Protein 75,Ring-Box Protein 1,Rbx1,Regulator Of Cull Roc1; Ec: 2.3.2.27,2.3.2.32 Engineered: Yes Other_details: Rbx1 Contains Mutation Asn98arg (N98r). Ther Zinc Ions Coordinated Throughout. This Is Not Meant To Alig C-Terminus Of The Protein.; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rbx1, Rnf75, Roc1 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||
Molecule: Ubiquitin-Conjugating Enzyme E2 D2 Chain: D Synonym: (E3-Independent) E2 Ubiquitin-Conjugating Enzyme D Ubiquitin-Conjugating Enzyme D2,Ubiquitin Carrier Protein D Ubiquitin-Conjugating Enzyme E2(17)Kb 2,Ubiquitin-Conjugati E2-17 Kda 2,Ubiquitin-Protein Ligase D2,P53-Regulated Ubiqu Conjugating Enzyme 1; Ec: 2.3.2.23,2.3.2.24 Engineered: Yes Other_details: Ube2d2 Contains Mutations Of The Following: Cys107ala, Cys111asp.; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2d2, Pubc1, Ubc4, Ubc5b, Ubch4, Ubch5b Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||
Molecule: Polyubiquitin-C Chain: U Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||
Molecule: Cys-Lys-Lys-Ala-Arg-His-Asp-Sep-Gly Chain: I Engineered: Yes Other_details: Phosphorylated Peptide Derived From Ikba. |
Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
| |||||||||||||||||||||||||||||
crystal cell |
| ||||||||||||||||||||||||||||||
method | Electron Microscopy | resolution | 3.70 Å | ||||||||||||||||||||||||||||
ligand | SEP, ZN | enzyme | Transferase E.C.2.3.2.27 BRENDA | ||||||||||||||||||||||||||||
Gene Ontology |
|
Data retrieval |
View 6TTU in 3D |
Visual 3D analysis of 6TTU |
Structure-derived information |
Sequence-derived information |
Other resources with information on 6TTU |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |