6TUB Hormone date Jan 05, 2020
title Beta-Endorphin Amyloid Fibril
authors J.Verasdonck, C.Seuring, J.Gath, D.Ghosh, N.Nespovitaya, M.A.Wael S.Maji, R.Cadalbert, A.Boeckmann, P.Guentert, B.H.Meier, R.Riek
compound source
Molecule: Beta-Endorphin
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pomc
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Star
Expression_system_vector_type: Pet32a
methodSolid-State NMR
Primary referenceThe three-dimensional structure of human beta-endorphin amyloid fibrils., Seuring C, Verasdonck J, Gath J, Ghosh D, Nespovitaya N, Walti MA, Maji SK, Cadalbert R, Guntert P, Meier BH, Riek R, Nat Struct Mol Biol. 2020 Oct 12. pii: 10.1038/s41594-020-00515-z. doi:, 10.1038/s41594-020-00515-z. PMID:33046908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (501 Kb) [Save to disk]
  • Biological Unit Coordinates (6tub.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 6TUB
  • Original NMR restraints for 6TUB from PDB
  • Retrieve 6TUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TUB from S2C, [Save to disk]
    • View 6TUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6TUB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tub_F] [6tub_A] [6tub_E] [6tub_D] [6tub_C] [6tub_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6TUB
  • Community annotation for 6TUB at PDBWiki (http://pdbwiki.org)

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