6TYF Transcription date Aug 08, 2019
title Crystal Structure Of Mtb Sigma L Transcription Initiation Co Nt Long Rna Primer
authors V.Molodtsov, R.H.Ebright
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpob
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoc, Rpoc_1, Rpoc_2, Dkc2_0716, Ers007665_00591, Ers023446_00410, Ers031537_00289, Ers124361_01694, Eub02_01 Eub03_00860, Eub11_05575, Samea2682835_07420, Samea2682864_
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoz, Dkc2_1480, Dsi35_24025, Ers007657_03145, Ers007661_02963, Ers007663_02972, Ers007665_03743, Ers00767 Ers007679_02942, Ers007681_04445, Ers007722_03066, Ers00774 Ers023446_03677, Ers024213_01369, Ers024276_01577, Ers02764 Ers027646_01439, Ers027651_03169, Ers027653_00843, Ers02765 Ers027661_02200, Ers027666_04715, Ers031537_03443, Eu767_08 Eu768_15085, Eu769_05250, Eu770_14555, Eu771_05130, Eu773_1 Eu774_06465, Eu775_07590, Eu776_17830, Eu777_06800, Eub02_1 Eub03_09550, Eub06_03645, Eub07_12165, Eub08_05285, Eub09_0 Eub10_04215, Eub11_10790, Eub13_01060, Eub14_01055, Eub16_0 Samea2682864_01599, Samea2683035_01133;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Gpcpaptpcpcpgptpgpapaptpcpgpapgpgpgpt)
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Dna (5'- D(Pgptpgptpcpapgptpapgpcptpgptpcpapcpgpg C)-3');
Chain: H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Rna (5'-R(Pcpcpupcpgpa)-3')
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Rna Polymerase Sigma Factor
Chain: F
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Sigl, Sigx, Dkc2_0784, Dsi35_13315, Ers007657_01744, Ers007661_01946, Ers007670_03245, Ers007672_04865, Ers00768 Ers007722_03570, Ers007731_02151, Ers007741_04102, Ers02344 Ers024213_03781, Ers027644_01708, Ers027646_03649, Ers02765 Ers027654_02031, Ers027659_03608, Ers027661_02428, Ers02766 Ers031537_01383, Ers124361_02832, Eu767_20440, Eu768_17405, Eu769_19535, Eu770_10565, Eu771_18640, Eu773_15915, Eu774_0 Eu775_01235, Eu776_08285, Eu777_18775, Eub02_13395, Eub03_0 Eub07_01225, Eub08_01615, Eub09_12390, Eub10_16580, Eub11_0 Eub12_18145, Eub13_14065, Eub14_03980, Eub16_03020, Samea2682835_06130, Samea2682864_01771, Samea2683035_02456;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.256 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.431 161.781 213.916 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.80 Å
ligand
enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (526 Kb) [Save to disk]
  • Biological Unit Coordinates (6tyf.pdb1.gz) 516 Kb
  • CSU: Contacts of Structural Units for 6TYF
  • Structure Factors (1024 Kb)
  • Retrieve 6TYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TYF from S2C, [Save to disk]
  • View 6TYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TYF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6tyf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tyf_A] [6tyf_I] [6tyf_E] [6tyf_H] [6tyf_B] [6tyf_C] [6tyf_F] [6tyf_D] [6tyf_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TYF
  • Community annotation for 6TYF at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science