6TYI Transport Protein date Aug 09, 2019
title Exbb-Exbd Complex In Msp1e3d1 Nanodisc
authors H.Celia, I.Botos, J.Jiang, S.K.Buchanan
compound source
Molecule: Biopolymer Transport Protein Exbb
Chain: A, B, C, D, E
Engineered: Yes
 Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Exbb, B3006, Jw2974
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Biopolymer Transport Protein Exbd
Chain: Y, Z
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Exbd, B3005, Jw2973
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
ligand PEV, PGT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Z, Y


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (6tyi.pdb1.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 6TYI
  • CSU: Contacts of Structural Units for 6TYI
  • Retrieve 6TYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TYI from S2C, [Save to disk]
    • View 6TYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6TYI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tyi_E] [6tyi_B] [6tyi_Y] [6tyi_C] [6tyi_D] [6tyi_A] [6tyi_Z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6TYI
  • Community annotation for 6TYI at PDBWiki (http://pdbwiki.org)

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