OCA Atlas for 6U0M

6U0M

Replication Dna

date

Aug 14, 2019

title

Structure Of The S. Cerevisiae Replicative Helicase Cmg In C With A Forked Dna

authors

Z.Yuan, R.Georgescu, L.Bai, D.Zhang, M.O'Donnell, H.Li

compound

source

Molecule: Dna Replication Complex Gins Protein Psf1
Chain: A
Synonym: Partner Of Sld Five 1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Psf1, Ydr013w, Pza208, Yd8119.18
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Complex Gins Protein Psf2
Chain: B
Synonym: Partner Of Sld Five 2
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Psf2, Yjl072c, Hrf213, J1086
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Complex Gins Protein Psf3
Chain: C
Synonym: Partner Of Sld Five 3
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Psf3, Yol146w
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Complex Gins Protein Sld5
Chain: D
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Sld5, Ydr489w
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Cell Division Control Protein 45
Chain: E
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Cdc45, Sld4, Ylr103c, L8004.11
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm2
Chain: 2
Synonym: Minichromosome Maintenance Protein 2
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm2, Ybl023c, Ybl0438
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm3
Chain: 3
Synonym: Minichromosome Maintenance Protein 3
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm3, Yel032w, Sygp-Orf23
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm4
Chain: 4
Synonym: Cell Division Control Protein 54
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm4, Cdc54, Hcd21, Ypr019w, Yp9531.13
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Minichromosome Maintenance Protein 5
Chain: 5
Synonym: Cell Division Control Protein 46
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm5, Cdc46, Ylr274w, L9328.1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm6
Chain: 6
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm7
Chain: 7
Synonym: Cell Division Control Protein 47,Minichromosome Ma Protein 7;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm7, Cdc47, Ybr202w, Ybr1441
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna (26-Mer)
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna (15-Mer)
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

3.90 Å

ligand

ATP

enzyme

Hydrolase E.C.3.6.4.12 BRENDA

Gene
Ontology

Chain	Function	Process	Component
2
3
4
5
6
7
A
B	3'-5' DNA helicase activity
C
D	3'-5' DNA helicase activity
E

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (745 Kb) [Save to disk]

Biological Unit Coordinates (6u0m.pdb1.gz) 736 Kb

LPC: Ligand-Protein Contacts for 6U0M

CSU: Contacts of Structural Units for 6U0M

Retrieve 6U0M in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6U0M from S2C, [Save to disk]

View 6U0M in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6U0M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6u0m_G] [6u0m_F] [6u0m_D] [6u0m_A] [6u0m_4] [6u0m_C] [6u0m_E] [6u0m_7] [6u0m_B] [6u0m_2] [6u0m_6] [6u0m_3] [6u0m_5]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6U0M

Community annotation for 6U0M at PDBWiki (http://pdbwiki.org)

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