6U15 Hydrolase date Aug 15, 2019
title Human Thymine Dna Glycosylase N140a Mutant Bound To Dna With Carboxyl-Dc Substrate Analog
authors L.S.Pidugu, E.Pozharski, A.C.Drohat
compound source
Molecule: Gt Mismatch-Specific Thymine Dna Glycosylase
Chain: A
Synonym: Thymine-Dna Glycosylase,Htdg
Ec: 3.2.2.29
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tdg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (28-Mer)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (28-Mer)
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.220 53.530 82.500 90.00 95.37 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 1FC, CSO enzyme Hydrolase E.C.3.2.2.29 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (6u15.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 6U15
  • CSU: Contacts of Structural Units for 6U15
  • Structure Factors (684 Kb)
  • Retrieve 6U15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U15 from S2C, [Save to disk]
  • View 6U15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U15
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u15_A] [6u15_C] [6u15_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U15
  • Community annotation for 6U15 at PDBWiki (http://pdbwiki.org)

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