6U16 Hydrolase date Aug 15, 2019
title Human Thymine Dna Glycosylase N140a Mutant Bound To Dna With Carboxyl-Dc Substrate
authors L.S.Pidugu, E.Pozharski, A.C.Drohat
compound source
Molecule: Gt Mismatch-Specific Thymine Dna Glycosylase
Chain: A
Synonym: Thymine-Dna Glycosylase,Htdg
Ec: 3.2.2.29
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tdg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (28-Mer)
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (28-Mer)
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.570 53.230 81.320 90.00 94.84 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 1CC, CSO, EDO enzyme Hydrolase E.C.3.2.2.29 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (6u16.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 6U16
  • CSU: Contacts of Structural Units for 6U16
  • Structure Factors (1740 Kb)
  • Retrieve 6U16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U16 from S2C, [Save to disk]
    • View 6U16 in 3D
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    • Visual 3D analysis of 6U16
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u16_A] [6u16_C] [6u16_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6U16
  • Community annotation for 6U16 at PDBWiki (http://pdbwiki.org)

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