6U17 Hydrolase date Aug 15, 2019
title Human Thymine Dna Glycosylase Bound To Dna With 2'-F-5-Carbo Substrate Analog
authors L.S.Pidugu, E.Pozharski, A.C.Drohat
compound source
Molecule: Gt Mismatch-Specific Thymine Dna Glycosylase
Chain: A
Synonym: Thymine-Dna Glycosylase,Htdg
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tdg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (28-Mer)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (30-Mer)
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free 0.224
length a length b length c angle alpha angle beta angle gamma
96.870 52.760 81.620 90.00 95.25 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand 1FC, ACT, CSO enzyme Hydrolase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (6u17.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 6U17
  • CSU: Contacts of Structural Units for 6U17
  • Structure Factors (1878 Kb)
  • Retrieve 6U17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U17 from S2C, [Save to disk]
  • View 6U17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 6U17
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6u17 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u17_C] [6u17_D] [6u17_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U17
  • Community annotation for 6U17 at PDBWiki (http://pdbwiki.org)

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