6U23 Immune System date Aug 19, 2019
title Em Structure Of Mpeg-1(W.T.) Soluble Pre-Pore
authors S.S.Pang, C.Bayly-Jones
compound source
Molecule: Macrophage-Expressed Gene 1 Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Synonym: Mpg-1, Perforin-2, P-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mpeg1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.49 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1325 Kb) [Save to disk]
  • Biological Unit Coordinates (6u23.pdb1.gz) 1310 Kb
  • LPC: Ligand-Protein Contacts for 6U23
  • CSU: Contacts of Structural Units for 6U23
  • Retrieve 6U23 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U23 from S2C, [Save to disk]
    • View 6U23 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6U23
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u23_O] [6u23_F] [6u23_D] [6u23_C] [6u23_P] [6u23_K] [6u23_M] [6u23_N] [6u23_A] [6u23_G] [6u23_H] [6u23_L] [6u23_I] [6u23_B] [6u23_J] [6u23_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6U23
  • Community annotation for 6U23 at PDBWiki (http://pdbwiki.org)

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