6U2F Hydrolase Hydrolase Inhibitor Immune Sys date Aug 19, 2019
title Pcsk9-Fab 7g7 Complex Bound To Cis-1-Amino-4-Phenylcyclohexa Wnlk(Hr)Igllr - Nh2
authors M.H.Ultsch, D.Kirchhofer
compound source
Molecule: Proprotein Convertase Subtilisinkexin Type 9
Chain: A
Synonym: Neural Apoptosis-Regulated Convertase 1, Narc-1, P Convertase 9, Pc9, Subtilisinkexin-Like Protease Pc9, Pcsk
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcsk9, Narc1, Psec0052
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029

Molecule: Organo-Peptide Pcsk9 Inhibitor
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 7g7 Heavy Chain
Chain: H
Fragment: Fab
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090

Molecule: 7g7 Light Chain
Chain: L
Fragment: Fab
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090
symmetry Space Group: I 2 2 2
R_factor 0.174 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.569 142.740 239.287 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.94 Å
ligand CA, HRG, PQG enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of Organo-Peptides As Bipartite PCSK9 Antagonists., Burdick DJ, Skelton NJ, Ultsch M, Beresini MH, Eigenbrot C, Li W, Zhang Y, Nguyen H, Kong-Beltran M, Quinn JG, Kirchhofer D, ACS Chem Biol. 2020 Jan 30. doi: 10.1021/acschembio.9b00899. PMID:31962046
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (608 Kb) [Save to disk]
  • Biological Unit Coordinates (6u2f.pdb1.gz) 600 Kb
  • LPC: Ligand-Protein Contacts for 6U2F
  • CSU: Contacts of Structural Units for 6U2F
  • Structure Factors (1398 Kb)
  • Retrieve 6U2F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U2F from S2C, [Save to disk]
  • View 6U2F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U2F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u2f_H] [6u2f_L] [6u2f_B] [6u2f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U2F
  • Community annotation for 6U2F at PDBWiki (http://pdbwiki.org)

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