6U5E Isomerase date Aug 27, 2019
title Rt Xfel Structure Of Cypa Solved Using Celloluse Carrier Med
authors A.M.Wolff, E.Nango, T.Nakane, I.D.Young, A.S.Brewster, M.Sugahara R.Tanaka, N.K.Sauter, K.Tono, S.Iwata, J.S.Fraser, M.C.Thompson
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase A
Chain: A
Synonym: Ppiase A,Cyclophilin A,Cyclosporin A-Binding Prote Rotamase A;
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppia, Cypa
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.135 R_Free 0.151
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.000 52.600 89.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (6u5e.pdb1.gz) 86 Kb
  • CSU: Contacts of Structural Units for 6U5E
  • Structure Factors (281 Kb)
  • Retrieve 6U5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U5E from S2C, [Save to disk]
    • View 6U5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6U5E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u5e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6U5E
  • Community annotation for 6U5E at PDBWiki (http://pdbwiki.org)

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