6U81 Dna Binding Protein Dna date Sep 04, 2019
title Crystal Structure Of The Double Homeodomain Of Dux4 In Compl Dna Aptamer
authors K.Shi, H.Aihara
compound source
Molecule: Double Homeobox Protein 4
Chain: A
Synonym: Double Homeobox Protein 10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dux4, Dux10
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333

Molecule: Dna (5'- D(Gpcpgptpapaptpcptpapaptpcpapapcpa)-3');
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'- D(Tpgptptpgpaptptpapgpcpcpcpaptptpapcpgp
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.216 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.640 73.190 108.070 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (6u81.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 6U81
  • CSU: Contacts of Structural Units for 6U81
  • Structure Factors (106 Kb)
  • Retrieve 6U81 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U81 from S2C, [Save to disk]
  • View 6U81 in 3D
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  • Visual 3D analysis of 6U81
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6u81 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u81_C] [6u81_A] [6u81_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U81
  • Community annotation for 6U81 at PDBWiki (http://pdbwiki.org)

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