6U8P Transferase Dna date Sep 05, 2019
title Crystal Structure Of Dnmt3b-Dnmt3l In Complex With Cpgpa Dna
authors L.Gao, J.Song
compound source
Molecule: Dna (Cytosine-5)-Methyltransferase 3b
Chain: A, D
Synonym: Dnmt3b,Dna Methyltransferase Hsaiiib,M.Hsaiiib
Ec: 2.1.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnmt3b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: De3

Molecule: Dna (Cytosine-5)-Methyltransferase 3-Like
Chain: B, C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnmt3l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: De3

Molecule: Cpgpa Dna (25-Mer)
Chain: E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31
R_factor 0.208 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
193.303 193.303 49.649 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.05 Å
ligand MG, PYO, SAH enzyme Transferase E.C.2.1.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (6u8p.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 6U8P
  • CSU: Contacts of Structural Units for 6U8P
  • Structure Factors (1032 Kb)
  • Retrieve 6U8P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U8P from S2C, [Save to disk]
  • View 6U8P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U8P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u8p_A] [6u8p_E] [6u8p_C] [6u8p_B] [6u8p_D] [6u8p_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U8P
  • Community annotation for 6U8P at PDBWiki (http://pdbwiki.org)

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